Alignment of alleles: Charr (Salvelinus alpinus) IGHV1S2

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 G   Q   T   L   T   E   S   E   S       V   V   K   K   P   G   D   S   H   K
  AJ000367,IGHV1S2*01           GGT CAG ACA CTG ACT GAG TCT GAA TCA ... GTG GTT AAA AAG CCT GGA GAT TCT CAC AAA

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   T   C   T   Y   S   G   F   G   G   N   Y   W                       N   A
  AJ000367,IGHV1S2*01           TTG ACC TGT ACA TAT TCT GGG TTT GGT GGC AAC TAT TGG ... ... ... ... ... AAT GCT

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   M   R   Q   A   S   G   K   G   L   E   W   V   A   T   I   S   D   G   G
  AJ000367,IGHV1S2*01           TGG ATG AGA CAG GCT TCT GGG AAA GGA CTG GAG TGG GTT GCA ACT ATC AGT GAT GGT GGC

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 R   T               Y   Y   S   Q   S   V   Q       G   Q   F   T   I   S   R
  AJ000367,IGHV1S2*01           AGG ACT ... ... ... TAC TAC TCT CAG TCT GTT CAG ... GGT CAG TTC ACC ATC TCC AGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   N   S   K   Q   Q   V   Y   L   Q   M   N   N   L   N   T   E   D   S   A
  AJ000367,IGHV1S2*01           GAC AAC AGC AAG CAG CAG GTG TAT CTC CAG ATG AAC AAT CTG AAC ACT GAA GAC TCT GCT

                                                CDR3-IMGT
                                101 102 103 104 105 106
                                 V   Y   Y   C   A   R
  AJ000367,IGHV1S2*01           GTT TAT TAT TGT GCC AGA  #c
#c: rearranged cDNA

Created: 03/07/2003
Author: Nathalie Bosc